PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 447aa    MW: 48541.4 Da    PI: 7.0287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.42e-09157211256
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                             ++lL  cA a+++ + +++++l + l+el+s +gd+++Rlaa+ ++AL+++ +  
  GSMUA_Achr10P17570_001 157 EQLLNPCAAAIEAANISRVRHLFCVLRELQSFSGDANHRLAAHGLRALSNHTSAA 211
                             689***********************************************98774 PP
2GRAS451.8e-14240338110208
                    GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                             + +H++D+++s+G+QWp+Ll+aLa  p+g+p  +R+ + g +++      +      ++ L ++A++++++++++      +edl  
  GSMUA_Achr10P17570_001 240 KSLHVVDIGVSHGVQWPTLLDALARNPGGAPkLVRLAVAGGAAPPgpfsVAPPGYDFQSHLLRYARSIDLNLRIDH-----TEDLGA 321
                             679************************8888578*99988876667788888999******************997.....799999 PP

                    GRAS 192 eeLrvkpgEalaVnlvl 208
                              + ++  gE+l+V+l  
  GSMUA_Achr10P17570_001 322 GSVALTVGETLVVCLLW 338
                             9************9876 PP
3GRAS39.11.1e-12340442267374
                    GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                             ++ds++a +    + r + Er++++ e+   + +  ++  +  e    Wrer+ ++GF++ +++e+a +  ++llrk++ ++++r  
  GSMUA_Achr10P17570_001 340 FLDSTSAAF----KGRESAERRVMEGEAARFLETTAEA--AAAEGRDLWRERMAAVGFREEAFGEEALDAGRALLRKYDgNWEMRAA 420
                             677776664....7788888888888888888877776..7889999********************************88889999 PP

                    GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                               ++++ l Wk++p+ ++S W+
  GSMUA_Achr10P17570_001 421 PAEAAVGLWWKGHPVSFCSLWK 442
                             9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.935130447IPR005202Transcription factor GRAS
PfamPF035146.9E-7157211IPR005202Transcription factor GRAS
PfamPF035146.1E-12240338IPR005202Transcription factor GRAS
PfamPF035144.0E-10340442IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MTFEGGPDPN LSPNRHHHHH VLDWLEDSVS FLSSFLDDSY AGNTADQITN YEWWTQEEDQ  60
ANMIHNPLVS TLATSNNSPL LPQAEISKKR KLSTNPTTPN KTPTHPNRQR IAIEGDGGFE  120
EEGEANKKPA ATGRKGHGKG NAGSSSNGVS KEVRWAEQLL NPCAAAIEAA NISRVRHLFC  180
VLRELQSFSG DANHRLAAHG LRALSNHTSA AGIAIPDRAG TSAATFATTE PKLFRSAIIK  240
SLHVVDIGVS HGVQWPTLLD ALARNPGGAP KLVRLAVAGG AAPPGPFSVA PPGYDFQSHL  300
LRYARSIDLN LRIDHTEDLG AGSVALTVGE TLVVCLLWRF LDSTSAAFKG RESAERRVME  360
GEAARFLETT AEAAAAEGRD LWRERMAAVG FREEAFGEEA LDAGRALLRK YDGNWEMRAA  420
PAEAAVGLWW KGHPVSFCSL WKPHRRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380039.10.0PREDICTED: nodulation-signaling pathway 1 protein
TrEMBLM0RJ320.0M0RJ32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-66GRAS family protein