PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 272aa    MW: 28936 Da    PI: 7.3553
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-057597123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++C + F+++  L  H++ H
  GSMUA_Achr10P17690_001 75 FECHYCYRQFPTSQALGGHQNAH 97
                            89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-672103No hitNo description
PROSITE profilePS5015711.05375102IPR007087Zinc finger, C2H2
PfamPF139122.3E-77599IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNERSEGRDF MSVDSFSQLP FIRPVPKPSS SSSSSTSGIR LFGIEVPHHP TNEEDNTEKD  60
HTTTVNGGGE SARKFECHYC YRQFPTSQAL GGHQNAHKRE RQHAKRVHIQ SAALAAIHHG  120
PAAIDGHHLY GFFNYHQPFG PVLPAAAHFA VDSPSTPHYP ACHATSAASG SFGGCFYGGL  180
GSAAQPINGS PLPGLWKAPG VVHGSASVGL VHGDSPMPSP TTRRDQEPRI EGIGGIISDG  240
NDRGASSASS KSQFAYQLMP GVKENVSLDL HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380052.10.0PREDICTED: zinc finger protein 8-like
TrEMBLM0RJ440.0M0RJ44_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8341720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.17e-29zinc finger protein 8