PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P17870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 207aa    MW: 22345.1 Da    PI: 10.0131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P17870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002881103123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C + F ++  L  H++ H
  GSMUA_Achr10P17870_001  81 FSCNYCQRQFFSSQALGGHQNAH 103
                             89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-678109No hitNo description
PROSITE profilePS5015711.34481108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSSSKPEASA DDFEASSQVA SNTCIQETSP SLSKQDTPIS LNLSLSVNAD STALAVVSLS  60
STSESSSESQ ACRPPNSRRV FSCNYCQRQF FSSQALGGHQ NAHKRERTLA KRAVGCPLSS  120
PHRVHHDRTV AAGGPTTPTC HAQIPAVEWN VNGSPNPTAP PGILVIISPR LALQTRRPHP  180
CAWQSRKRIY LPITDVRAPR HPYKGAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380069.13e-72PREDICTED: zinc finger protein 4-like
TrEMBLM0RJ621e-149M0RJ62_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P17870_0011e-150(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-18zinc-finger protein 1