PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26030.6 Da    PI: 6.0671
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF916e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+i+n + rqvtfskRr g++KKAeELS+LCdaeva+i+fsstgkl+e+ss
  GSMUA_Achr10P19290_001  9 KKISNATARQVTFSKRRRGLFKKAEELSILCDAEVALIVFSSTGKLFEFSS 59
                            68***********************************************96 PP
2K-box50.58.7e-18911701998
                   K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                              +++ L ++i     ++R++ Ge+L+ L++ eL +Le+ Le++l+k+ ++K ++++eqi++lq+k k+l e+n++Lrk++
  GSMUA_Achr10P19290_001  91 SNYTSLSNQIADASLQLRQMRGEELQGLTIHELLRLEKTLEEGLRKVLETKGQHIMEQINDLQEKGKKLMEDNERLRKQV 170
                             5788999999999999**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.487161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.08E-40277No hitNo description
PRINTSPR004041.4E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-31374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.84186176IPR002487Transcription factor, K-box
PfamPF014861.1E-1691170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAREKIQIKK ISNATARQVT FSKRRRGLFK KAEELSILCD AEVALIVFSS TGKLFEFSSS  60
SMKEILEKHT THSKNLEKAE APLIDLNLDD SNYTSLSNQI ADASLQLRQM RGEELQGLTI  120
HELLRLEKTL EEGLRKVLET KGQHIMEQIN DLQEKGKKLM EDNERLRKQV VMMAREEKQL  180
VTESENITYE DGQSSESVSN ALQLRMPQDT DDNSHTTLQL GLPVSKWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22173173MEF2C
5f28_B2e-22173173MEF2C
5f28_C2e-22173173MEF2C
5f28_D2e-22173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380237.11e-166PREDICTED: MADS-box transcription factor 22
RefseqXP_018674516.11e-166PREDICTED: MADS-box transcription factor 22
SwissprotQ9XJ663e-88MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLM0RJK41e-164M0RJK4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19290_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-87MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]