PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P19950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 590aa    MW: 66602.9 Da    PI: 8.9467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P19950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17366414254
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                             ++kGVr+++ +g+W+AeIrdp    +r  r++lg+++tae Aa+a+ aa++++ 
  GSMUA_Achr10P19950_001 366 KFKGVRQRP-WGKWAAEIRDP----IRgVRIWLGTYDTAEAAAAAYAAAARRFQ 414
                             89*******.**********7....246*********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-16366398No hitNo description
PfamPF008477.9E-11366410IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-17366417IPR016177DNA-binding domain
PROSITE profilePS5103220.639366423IPR001471AP2/ERF domain
SMARTSM003805.9E-25366429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-22366418IPR001471AP2/ERF domain
PRINTSPR003671.8E-9367378IPR001471AP2/ERF domain
PRINTSPR003671.8E-9389405IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MPTLPVRPST ACFTALALIE VVSLRLCCSM WSGIRYECFE IIVTVFRHAF LCKEGILFTS  60
MDCKNGSSCF LRPIEREREV MLESWDFISS LLLEMWALPI EYGHSLCWKS LRMRPHHTHP  120
RHKANMSSNR AVWIYVVWSL RSIVSRCWKL GSFGSATVCF WCHRWSLPLS HPQLRLLFFT  180
VAEEEGFDAI CKGWFWSDVF RISAYISVLF PIHLLESNPY LTERSKKEKP TFSFYFSFLF  240
SILRGEMTPG ERLCGKQHHK PLRRRGKKQR HRTEAASQLQ SRLLARRIRV VFDDPDATES  300
SDDEGMNYSC RKKRAIHEFS VLPTFPLSLL QASSEESSGR KPKNSRRPKV ITLGSVNSTS  360
GTSPVKFKGV RQRPWGKWAA EIRDPIRGVR IWLGTYDTAE AAAAAYAAAA RRFQSEKKIL  420
AADVSSNSTT TSTSSCASMH SDAVAVAVPP SPSSVLDISA SAIAEYSQVS PEKTAPAGAA  480
ERCFSELLME QQLASPFSLE SAFPFESDPF LESVLLDEEF VPLEGKKSMA GVVPHVMLSV  540
PHIVSSDFVS KPRLVVEFFN AALLLRSFWC SLYMDGRRAL RLCQTGELIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15367428668ATERF1
3gcc_A3e-15367428668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0RJS00.0M0RJS0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P19950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-17cytokinin response factor 4