PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P20500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 98aa    MW: 11128.4 Da    PI: 9.4513
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P20500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.9e-091357345
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                            +WT++  +l+ +a + + ++   +W  +ar +g g+t  ++k ++ 
  GSMUA_Achr10P20500_001 13 SWTAQQNKLFERALAVYDKDtpdRWQNVARAVG-GKTVDEVKRHYE 57
                            7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.94964IPR017884SANT domain
SMARTSM007175.5E-81062IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-121267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-41363IPR009057Homeodomain-like
PfamPF002491.7E-61357IPR001005SANT/Myb domain
CDDcd001675.77E-61460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASGSLSRSS GSSWTAQQNK LFERALAVYD KDTPDRWQNV ARAVGGKTVD EVKRHYELLV  60
EDLKFIESNR VPYPYYKSSS SRAGGADEEQ RLRCLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-36198193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380360.11e-67PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0RJX52e-66M0RJX5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P20500_0014e-67(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.28e-37RAD-like 6