PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P20760_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 167aa MW: 18176.8 Da PI: 9.005

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P20760_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.8	2.5e-26	11	72	1	62
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslv 62 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv kll++l +++reda++ l GSMUA_Achr10P20760_001 11 PCAACKFLRRKCIPGCIFAPYFPPEEPHKFANVHKIFGASNVAKLLNELLPHQREDAVQRLQ 72 7********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.692	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-26	11	79	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASSSSSSNS PCAACKFLRR KCIPGCIFAP YFPPEEPHKF ANVHKIFGAS NVAKLLNELL 60 PHQREDAVQR LQKELDAANA DLLRYACNDI PLGLPVPPTM ASPMGAYRRT EFSRRIGNRG 120 GPLFQAPALA VPSPPPWSTD IFSGDHSNNP LWAPAYTYNP LSKTAVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	2	96	2	128	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	2	96	2	128	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380394.1	2e-96	PREDICTED: LOB domain-containing protein 25
Refseq	XP_009380395.1	2e-96	PREDICTED: LOB domain-containing protein 25
Refseq	XP_018674881.1	2e-96	PREDICTED: LOB domain-containing protein 25
Refseq	XP_018674882.1	2e-96	PREDICTED: LOB domain-containing protein 25
Swissprot	Q9FML4	9e-46	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	M0RK01	1e-120	M0RK01_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P20760_001	1e-120	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8813	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-43	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]