PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22190_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 480aa    MW: 52594.6 Da    PI: 8.2107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22190_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.6e-052062451155
                             HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ +++  L +l+ +      +K + a++L++A+ YI+ Lq
  GSMUA_Achr10P22190_001 206 VRKEKLGDRITALHQLVSPF-----GKTDTASVLQEAIGYIRFLQ 245
                             57778889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.417195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7205252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10205257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-6205249No hitNo description
SuperFamilySSF524995.49E-37309479IPR000868Isochorismatase-like
CDDcd004316.47E-35310465No hitNo description
Gene3DG3DSA:3.40.50.8501.9E-39316479IPR000868Isochorismatase-like
PfamPF008571.9E-27321470IPR000868Isochorismatase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNKGAFQSYL VQQQMEGGPT WWSMKNMKPP PELTFPLLPS SSSPVFPEYA QPSSTEMTPW  60
QHSQDLPESW YQLLLGGIVG EEEKYGSTPF QTKKMEICAD QPDQVPYPSA TAQIADVKRV  120
PLGNGNVHSR GSEEIQVSGS AWSRILPASS PRSCITTSFS TNMLDFSNNS GRRPENSSEC  180
NSTETAPASK KVRVQGSSSP KSILKVRKEK LGDRITALHQ LVSPFGKTDT ASVLQEAIGY  240
IRFLQCQIEA LSSPYLSSGS GNMRLPSSNG SGKNKSGPQD QERNDEAKKD LRSRGLCLVP  300
VSFTMHVGSD DGAGFWAPTL AIVASVIQAV AIARERGILV IWVVREHDPL GRDVELFRRH  360
FYSDGKGPTA KGCKGAELVD GLVIKDRDYK LVKTRFSAFF ATHLHSLLQS CGIKSLVVVG  420
VQTPNCIRQT VFDAVALDYH HVTVIVDATA AATPQIHYDN IRDMKNIGVA TPTLQEWLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hu5_A2e-2831946935181Isochorismatase family protein
3hu5_B2e-2831946935181Isochorismatase family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380570.10.0PREDICTED: transcription factor bHLH68 isoform X3
TrEMBLM0RKE40.0M0RKE4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22190_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-50bHLH family protein