PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P22520_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TALE

Protein Properties

Length: 1666aa MW: 185852 Da PI: 8.8019

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P22520_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30	8.8e-10	1502	1539	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++LAk++gLt +qV++WF N R + GSMUA_Achr10P22520_001 1502 FEHflHPYPTDVDKQDLAKQTGLTRNQVSNWFINARVR 1539 554458******************************88 PP
2	BELL	103	2.2e-33	1372	1438	6	72
BELL 6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 kk+ L+s+l+eV++rYkqy++q+q+vi sFe vagl sa+pY+s+Alka+S+hFrcLk+ i++qi GSMUA_Achr10P22520_001 1372 LWKKTSLISMLDEVYRRYKQYYQQMQAVITSFESVAGLSSAAPYASMALKAMSKHFRCLKNIISDQI 1438 569**************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103473	2.88E-21	25	243	IPR020846	Major facilitator superfamily domain
CDD	cd06174	2.17E-4	31	233	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	3.6E-9	36	233	No hit	No description
PROSITE pattern	PS01022	0	89	113	IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
Pfam	PF00854	6.6E-91	100	524	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	2.88E-21	320	517	IPR020846	Major facilitator superfamily domain
CDD	cd06174	8.13E-5	332	519	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	8.5E-7	381	535	No hit	No description
SuperFamily	SSF103473	5.1E-18	585	797	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	7.4E-7	608	789	No hit	No description
PROSITE pattern	PS01022	0	643	667	IPR018456	PTR2 family proton/oligopeptide symporter, conserved site
Pfam	PF00854	4.2E-60	654	961	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	5.1E-18	875	1089	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.2E-4	934	949	No hit	No description
CDD	cd06174	8.41E-4	977	1086	IPR020846	Major facilitator superfamily domain
Pfam	PF00854	4.5E-11	977	1048	IPR000109	Proton-dependent oligopeptide transporter family
Gene3D	G3DSA:1.20.1250.20	1.2E-4	981	1090	No hit	No description
SMART	SM00574	1.3E-35	1323	1436	IPR006563	POX domain
Pfam	PF07526	3.4E-33	1328	1435	IPR006563	POX domain
PROSITE profile	PS50071	12.39	1480	1543	IPR001356	Homeobox domain
SMART	SM00389	9.4E-11	1483	1547	IPR001356	Homeobox domain
CDD	cd00086	4.80E-13	1483	1544	No hit	No description
SuperFamily	SSF46689	3.68E-16	1485	1550	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-27	1486	1547	IPR009057	Homeodomain-like
Pfam	PF05920	7.8E-18	1500	1539	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006857	Biological Process	oligopeptide transport
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0005215	Molecular Function	transporter activity

Sequence ? help Back to Top
Protein Sequence Length: 1666 aa Download sequence Send to blast
MEKPQEDAQK WVGDSSVDHK GRVPRRASTG CWKASLFIIV IEFSERLSYF GLATNLIIYL 60 TKVLHEEVKT AAKNVNYWSG VTTMMPLVGG FVADAYLGRF STVVISSLIY IAGLVLLMVS 120 ELVPRLKPCD PSICGRSLRL HEVIFFLAMY LISVGTGGHK PSLESFGADQ FDDNHDEERK 180 KKMSYFNWWN FALCSGLMLG VTMVVYVQDA VGWWLADVVL TAVMCFSLVV FVVGSPFYRY 240 RAPEGSPFKP MLQVVVAAAA KRHLPLPSDA GELYEVPKTQ KSDKRLLCHT NQLRFLDRAA 300 IVEHKYDEAA FAAEKHNSWR LATVTQVEEL KLILSMVPIW LAALPFGICV AQANTFFIKQ 360 GSVMDRQVTN SFKIPPASVY SLSAIGMIVS VTFYDKLLVP FLRKATGNER GISILKRIGI 420 GMAITTVAMI SAALVERKRL RVAVTEQTSV VSMSVFWLLP QFVIMGIGDG FALVGLQEYF 480 YDQVPDGMRS LGIAFYLSVL GAANFLSSLL ITIVDHITSR EGKGSWFAKD LNKSRLDLYY 540 WLIATITVMV EKGRMEKSKD DVQRFVFDSS VDHNGRVPCR TSTGCWKASL FIVAIEFSER 600 LSYFGLATNL IIYLTKVLRQ ELKTAAKNVN YWSGVTTVVP LVGGFIADAY LGRFSTVIIS 660 TLIYIGGLLL LTMSQIVPRL KPCDPVTCGR SLGLHEVIFF LAMYLISLGT GGHKPSLESF 720 GADQFDDNHD EERRKRMSFF NWWNFALCSG LILGVTVVVY VQDRVGWWQA DVALTATMAL 780 SLVSFLAGRP FYRYRKPEGS PFTPMLQVVA AAMAKRHLPL PSDARELCEV PETQTTSKRL 840 LCHTNKLRFL DKAAIIEQKH DEAATAAAGK QNPWRLATVT QVEELKLVLS MVPIWITVLP 900 FGICIAQTNT FFVKQGSVMD RQIGNGFIIP AASIFSLGAL GMVISVTFYE RMLVPILRRV 960 TGDERGRLKV AENEGTIAVS MSVLWLAPQF VIIGVGDGFA LVGLQEYFYD QVPDSMRSLG 1020 IAFYLSVLGV ANFISSVLIT VVDRITSRGG RGSWFAKDVN KSRLDLFYWL LAIMGALNLC 1080 CYVFLARSYS YKKVHQRRVG VIDSSEDDTS SSPRSLSLSL YLPSSEFYKG YCTDRCDPHL 1140 RNSCVTPPHL PPFSVTTKAA VVITSPLASH LNSTRCCGGE LDRRDNPWEE QLLQQQPQMY 1200 YHVPQHSRRE KLRFPQEMSP SHTSFLLLHD HNAATPLYPA GSLTALLPSF CTSFSSSDYS 1260 HNPPISNGVA QFDGHGALPI PSQHQHQIHN QGFSLSLSSS SSPRPTTSRH QVITRTTPLG 1320 PFTGYAAVLN RSRFLDPARK LMEEVCHVGQ QAAIGGGSRE MLLDVDPSRE SLWKKTSLIS 1380 MLDEVYRRYK QYYQQMQAVI TSFESVAGLS SAAPYASMAL KAMSKHFRCL KNIISDQIHH 1440 ANKGIRNEGN SREEISSFGL VDNIGYLQRT TNSTGTFAQP HVWRPQRGLP ERAVSVLRSW 1500 LFEHFLHPYP TDVDKQDLAK QTGLTRNQVS NWFINARVRL WKPMVEEIHS LEMRQKNKVS 1560 AGDHRFLYLM GTKCIDQEEL SPVPVNLVCD GTPNHQHVGG VGNGVSLTLG LHQNNGVCLS 1620 EPLPLSVARR FGLEECSDTY LVTPFGDQER QFGKDVGTRL LHDFVG

Sequence ? help Back to Top

Protein Sequence Length: 1666 aa Download sequence Send to blast

MEKPQEDAQK WVGDSSVDHK GRVPRRASTG CWKASLFIIV IEFSERLSYF GLATNLIIYL  60
TKVLHEEVKT AAKNVNYWSG VTTMMPLVGG FVADAYLGRF STVVISSLIY IAGLVLLMVS  120
ELVPRLKPCD PSICGRSLRL HEVIFFLAMY LISVGTGGHK PSLESFGADQ FDDNHDEERK  180
KKMSYFNWWN FALCSGLMLG VTMVVYVQDA VGWWLADVVL TAVMCFSLVV FVVGSPFYRY  240
RAPEGSPFKP MLQVVVAAAA KRHLPLPSDA GELYEVPKTQ KSDKRLLCHT NQLRFLDRAA  300
IVEHKYDEAA FAAEKHNSWR LATVTQVEEL KLILSMVPIW LAALPFGICV AQANTFFIKQ  360
GSVMDRQVTN SFKIPPASVY SLSAIGMIVS VTFYDKLLVP FLRKATGNER GISILKRIGI  420
GMAITTVAMI SAALVERKRL RVAVTEQTSV VSMSVFWLLP QFVIMGIGDG FALVGLQEYF  480
YDQVPDGMRS LGIAFYLSVL GAANFLSSLL ITIVDHITSR EGKGSWFAKD LNKSRLDLYY  540
WLIATITVMV EKGRMEKSKD DVQRFVFDSS VDHNGRVPCR TSTGCWKASL FIVAIEFSER  600
LSYFGLATNL IIYLTKVLRQ ELKTAAKNVN YWSGVTTVVP LVGGFIADAY LGRFSTVIIS  660
TLIYIGGLLL LTMSQIVPRL KPCDPVTCGR SLGLHEVIFF LAMYLISLGT GGHKPSLESF  720
GADQFDDNHD EERRKRMSFF NWWNFALCSG LILGVTVVVY VQDRVGWWQA DVALTATMAL  780
SLVSFLAGRP FYRYRKPEGS PFTPMLQVVA AAMAKRHLPL PSDARELCEV PETQTTSKRL  840
LCHTNKLRFL DKAAIIEQKH DEAATAAAGK QNPWRLATVT QVEELKLVLS MVPIWITVLP  900
FGICIAQTNT FFVKQGSVMD RQIGNGFIIP AASIFSLGAL GMVISVTFYE RMLVPILRRV  960
TGDERGRLKV AENEGTIAVS MSVLWLAPQF VIIGVGDGFA LVGLQEYFYD QVPDSMRSLG  1020
IAFYLSVLGV ANFISSVLIT VVDRITSRGG RGSWFAKDVN KSRLDLFYWL LAIMGALNLC  1080
CYVFLARSYS YKKVHQRRVG VIDSSEDDTS SSPRSLSLSL YLPSSEFYKG YCTDRCDPHL  1140
RNSCVTPPHL PPFSVTTKAA VVITSPLASH LNSTRCCGGE LDRRDNPWEE QLLQQQPQMY  1200
YHVPQHSRRE KLRFPQEMSP SHTSFLLLHD HNAATPLYPA GSLTALLPSF CTSFSSSDYS  1260
HNPPISNGVA QFDGHGALPI PSQHQHQIHN QGFSLSLSSS SSPRPTTSRH QVITRTTPLG  1320
PFTGYAAVLN RSRFLDPARK LMEEVCHVGQ QAAIGGGSRE MLLDVDPSRE SLWKKTSLIS  1380
MLDEVYRRYK QYYQQMQAVI TSFESVAGLS SAAPYASMAL KAMSKHFRCL KNIISDQIHH  1440
ANKGIRNEGN SREEISSFGL VDNIGYLQRT TNSTGTFAQP HVWRPQRGLP ERAVSVLRSW  1500
LFEHFLHPYP TDVDKQDLAK QTGLTRNQVS NWFINARVRL WKPMVEEIHS LEMRQKNKVS  1560
AGDHRFLYLM GTKCIDQEEL SPVPVNLVCD GTPNHQHVGG VGNGVSLTLG LHQNNGVCLS  1620
EPLPLSVARR FGLEECSDTY LVTPFGDQER QFGKDVGTRL LHDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4oh3_A	1e-102	18	1113	5	587	Nitrate transporter 1.1
4oh3_B	1e-102	18	1113	5	587	Nitrate transporter 1.1
5a2n_A	1e-102	18	1113	5	587	PROTEIN NRT1/ PTR FAMILY 6.3
5a2n_B	1e-102	18	1113	5	587	PROTEIN NRT1/ PTR FAMILY 6.3
5a2o_A	1e-102	18	1113	5	587	NITRATE TRANSPORTER 1.1
5a2o_B	1e-102	18	1113	5	587	NITRATE TRANSPORTER 1.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027904690.1	0.0	protein NRT1/ PTR FAMILY 5.7-like
Swissprot	Q9M331	0.0	PTR45_ARATH; Protein NRT1/ PTR FAMILY 5.7
TrEMBL	M0RKH7	0.0	M0RKH7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P22520_001	0.0	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02030.1	3e-66	TALE family protein

Publications ? help Back to Top
Maathuis FJ cGMP modulates gene transcription and cation transport in Arabidopsis roots. Plant J., 2006. 45(5): p. 700-11 [PMID:16460505] Tsay YF,Chiu CC,Tsai CB,Ho CH,Hsu PK Nitrate transporters and peptide transporters. FEBS Lett., 2007. 581(12): p. 2290-300 [PMID:17481610] Li JY, et al. The Arabidopsis nitrate transporter NRT1.8 functions in nitrate removal from the xylem sap and mediates cadmium tolerance. Plant Cell, 2010. 22(5): p. 1633-46 [PMID:20501909] Léran S, et al. A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants. Trends Plant Sci., 2014. 19(1): p. 5-9 [PMID:24055139]