PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 221aa    MW: 24552.3 Da    PI: 6.2468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144466123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C + F++   L  H+++H
  GSMUA_Achr10P22550_001 44 YSCSFCRREFRSAQALGGHMNVH 66
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-64171No hitNo description
PROSITE profilePS5015711.2194471IPR007087Zinc finger, C2H2
SMARTSM003550.00984466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEFWKWATTE YSSSGPRIPG LVVDESWEDA AGRSGGCVWP PRSYSCSFCR REFRSAQALG  60
GHMNVHRRDR ARLKQCSSLS GETTDDHRRP DPRSPPLVLH PAANPNPNSG VVPPKPAPPF  120
SSSITRDYLT GSHLSTIRSP EDSTAPLHLL VVSESGVLGS WTDPEISDEE TNCNKRRRIE  180
PTPEGFFLAA FSGDRRYEVL DDNPVQELDL ELRLGDAPKI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-133966229superman protein
2l1o_A6e-133966229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381770.11e-162PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0RKI01e-160M0RKI0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22550_0011e-161(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-24C2H2 family protein