PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P22970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 250aa    MW: 26978.4 Da    PI: 6.6119
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P22970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.63.6e-42871861100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrr+Ca +Cvlapyfp ++p kf  +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+
  GSMUA_Achr10P22970_001  87 PCAACKILRRRCAGKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQV 173
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++l+a+la++++e
  GSMUA_Achr10P22970_001 174 NELQAQLAQAQAE 186
                             ********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.25686187IPR004883Lateral organ boundaries, LOB
PfamPF031953.7E-4287184IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASCSSALAL YMYSPGLEAS HHHLDSFPPP SSKAMKSSDP TTTITSSFQH SSSSSSSNSS  60
SPTSSPISSS PPSLPPTTPP PPVIHSPCAA CKILRRRCAG KCVLAPYFPP TEPLKFTTAH  120
RVFGASNIIK LLQDLPESQR ADAVSSMVYE ANARIRDPVY GCAGAIFQLQ KQVNELQAQL  180
AQAQAELLNL QAQHKNLIAL ICVEVAQNQQ DRAPRSTDAL AAGNYLLQND AYFLDEINQE  240
GSVWDEPLWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-43761893113LOB family transfactor Ramosa2.1
5ly0_B4e-43761893113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380677.10.0PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR01e-68LBD1_ARATH; LOB domain-containing protein 1
TrEMBLM0RKM20.0M0RKM2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P22970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-55LOB domain-containing protein 1