PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P23260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 469aa MW: 52123.6 Da PI: 6.5109

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P23260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5e-32	260	314	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt eLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl GSMUA_Achr10P23260_001 260 KTRLRWTLELHERFVEAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 314 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.544	257	317	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-30	258	315	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-17	259	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-24	260	315	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	262	313	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-22	351	398	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MSSHSLITVK QNNSPEGTKH LCHSSPLSVQ FNNEQDCQKL SRSSYVETVL HNSSSFSKDL 60 PLHTKKSSSG PEPGSSCSYV SHPQYPEHMF SRSSTFCTSL YSSSSTSSES CQKLQNLPFL 120 PHPPKCKHQN SAVQSSNSPL QFSGDISATS GEDEHTDDLM KDFLNLSGEV SDGSIHGENC 180 GSSGLALNEQ IELQILSEQL GIAITDNGES PHLDDIYETP QVSSLPLSAN HNQTDQPSKP 240 HTKVQLHSPP SINPASAANK TRLRWTLELH ERFVEAVNKL DGAEKATPKG VLKLMNVEGL 300 TIYHVKSHLQ KYRLAKYLPE AKEDKKASSR EDKKSSSLVS NDGDLANKRS IQVTEALRMQ 360 IEVQKQLHEQ LEVQRALQLR IEENARYLQK ILEEQQKANN SSSSTQRFSS EPPLELRSPF 420 TEKADARVDS SPLNSVKQRG NESNDRESDS ESVEDSKRMR LDVEHIRPS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MSSHSLITVK QNNSPEGTKH LCHSSPLSVQ FNNEQDCQKL SRSSYVETVL HNSSSFSKDL  60
PLHTKKSSSG PEPGSSCSYV SHPQYPEHMF SRSSTFCTSL YSSSSTSSES CQKLQNLPFL  120
PHPPKCKHQN SAVQSSNSPL QFSGDISATS GEDEHTDDLM KDFLNLSGEV SDGSIHGENC  180
GSSGLALNEQ IELQILSEQL GIAITDNGES PHLDDIYETP QVSSLPLSAN HNQTDQPSKP  240
HTKVQLHSPP SINPASAANK TRLRWTLELH ERFVEAVNKL DGAEKATPKG VLKLMNVEGL  300
TIYHVKSHLQ KYRLAKYLPE AKEDKKASSR EDKKSSSLVS NDGDLANKRS IQVTEALRMQ  360
IEVQKQLHEQ LEVQRALQLR IEENARYLQK ILEEQQKANN SSSSTQRFSS EPPLELRSPF  420
TEKADARVDS SPLNSVKQRG NESNDRESDS ESVEDSKRMR LDVEHIRPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-25	260	317	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018674430.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_018674431.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_018674432.1	0.0	PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-120	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	M0RKQ1	0.0	M0RKQ1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P23260_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-93	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]