PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P23370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 137aa    MW: 16029.1 Da    PI: 9.2428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P23370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.14.2e-155398555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                            + ++Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++YIk+Lq
  GSMUA_Achr10P23370_001 53 NIAMERNRRKKLNEKLYALRSVVPNI-----TKMDKASIIKDAIDYIKQLQ 98
                            6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-2046114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.2064897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1352102No hitNo description
PfamPF000101.0E-125298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1854115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEDMEAEYSL YWETKRFIDS EELESWGFEE AISGGYYDSS SPEGTTSSTT AKNIAMERNR  60
RKKLNEKLYA LRSVVPNITK MDKASIIKDA IDYIKQLQEQ EKVMLAEISE LEGRRSEPRR  120
APRLRVPQAR RPSKYRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380730.12e-76PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV96e-39BH035_ARATH; Transcription factor bHLH35
SwissprotQ700E37e-39BH027_ARATH; Transcription factor bHLH27
TrEMBLM0RKR23e-94M0RKR2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P23370_0015e-95(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.43e-37bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]