PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P24170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 176aa    MW: 19832.4 Da    PI: 6.7898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P24170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-18652151
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                            ++y+GVr++  +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++
  GSMUA_Achr10P24170_001  6 PRYRGVRQRQ-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAAR 52
                            68*****999.**********8.....334*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-11651IPR001471AP2/ERF domain
CDDcd000183.32E-32664No hitNo description
SuperFamilySSF541711.05E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-32764IPR001471AP2/ERF domain
PROSITE profilePS5103221.47764IPR001471AP2/ERF domain
SMARTSM003801.3E-37770IPR001471AP2/ERF domain
PRINTSPR003672.4E-11819IPR001471AP2/ERF domain
PRINTSPR003672.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVRPQPRYRG VRQRQWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLVAGPRAR  60
TNFPFNPNSA SSSSETNYLS AALTAKLHRC NLASLEAAPQ PVVRNSPALK VSVSVVDRPK  120
NKMTVAVEQP VYPNWIMKES GTDEVEFSYL EEHQVEQMIE ELLDSNLGVE LCYASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17870669ATERF1
3gcc_A1e-17870669ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381795.11e-129PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-55ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM0RKZ21e-127M0RKZ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P24170_0011e-128(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-38ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]