PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P24810_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 27195.6 Da PI: 5.4486

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P24810_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	10	63	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k GSMUA_Achr10P24810_001 10 KKRRLSADQVRALEKNFEVDNKLEPERKVRLAQELGLQPRQVAVWFQNRRARWK 63 45689************************************************9 PP
2	HD-ZIP_I/II	132.3	1.7e-42	10	101	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kkrrls++qv++LE++Fe ++kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+aLk++yd+l+ + ++L++++e+L GSMUA_Achr10P24810_001 10 KKRRLSADQVRALEKNFEVDNKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLEHDYAALKASYDQLRLDCDALRRDKESLL 96 9************************************************************************************** PP HD-ZIP_I/II 89 eelke 93 +e+ke GSMUA_Achr10P24810_001 97 AEIKE 101 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.67	5	65	IPR001356	Homeobox domain
SMART	SM00389	2.6E-19	8	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-20	8	74	IPR009057	Homeodomain-like
Pfam	PF00046	8.4E-17	10	63	IPR001356	Homeobox domain
CDD	cd00086	9.93E-19	10	66	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-21	12	72	IPR009057	Homeodomain-like
PRINTS	PR00031	9.4E-6	36	45	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	40	63	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.4E-6	45	61	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.7E-17	65	106	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MCSGGPRGAK KRRLSADQVR ALEKNFEVDN KLEPERKVRL AQELGLQPRQ VAVWFQNRRA 60 RWKTKQLEHD YAALKASYDQ LRLDCDALRR DKESLLAEIK ELRAKLAEDG SLSFCLGKED 120 PVASDAEQKA TAPQEPPPLI CKDGSSDSDS SAVLNDAILN DDDSPRGLSS SASAPNILSV 180 AAIGYGTFSS FPASPPPLLN LDFRTLKPIG GLNHQNHAMK IEELLGVVEP CSGFFSDDQT 240 PSPNWFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	65	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380877.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX20-like
Swissprot	A2YWC0	4e-59	HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
Swissprot	Q6Z248	4e-59	HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBL	M0RL56	1e-180	M0RL56_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P24810_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-50	homeobox protein 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]