PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 177aa    MW: 19120.4 Da    PI: 5.669
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-183281255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  GSMUA_Achr10P25270_001 32 HYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAAVLCLKG 81
                            7*****998.**********9...336************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-303190IPR001471AP2/ERF domain
CDDcd000184.44E-213291No hitNo description
SMARTSM003801.8E-343295IPR001471AP2/ERF domain
PfamPF008472.4E-113281IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203291IPR016177DNA-binding domain
PROSITE profilePS5103221.723289IPR001471AP2/ERF domain
PRINTSPR003671.1E-83344IPR001471AP2/ERF domain
PRINTSPR003671.1E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVKSSSSKVL QASADSNNNS TPSKLGSNGK RHYKGVRMRS WGSWVSEIRA PNQKTRIWLG  60
SYSTPEAAAR AYDAAVLCLK GSSASLNFPA SPPFHVPDAI MSPKSIQRVA AAAAADATIQ  120
TEEAPFGDDC LLDTIDVEAF FQSPKFMDYM LHPSSFFGPS QVDDCGEEGD ISLWSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143189463ATERF1
3gcc_A1e-143189463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380924.11e-109PREDICTED: ethylene-responsive transcription factor ERF014-like
TrEMBLM0RLA11e-128M0RLA1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25270_0011e-129(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-37ERF family protein