PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 250aa    MW: 27832.9 Da    PI: 7.7394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09141188455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN ++  Lr+l+P +    +k +  a +L + ++Y++sLq
  GSMUA_Achr10P25460_001 141 SHSLAERVRREKINRKMRFLRDLVPGC----CKAMGMAGMLDEIINYVRSLQ 188
                             8*************************8....567999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.86E-9135192No hitNo description
SuperFamilySSF474599.81E-16135201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.78137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16138201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-6141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEEFLEDSGL ELTRKFPELE GPAMENSSLE LMCYPQQNCL SHQPEFSMPS VDNLLSSMVT  60
PVSHAMVSAG QQSHGDQKMK VTAEPVFGLS LDCSNSGEKS SVLNILLQSC GIKKRGRSLQ  120
RASEPKEVVH VRARRGEATD SHSLAERVRR EKINRKMRFL RDLVPGCCKA MGMAGMLDEI  180
INYVRSLQNQ VELLSMEIAA AASSYDNSWV ETPQVMKLIR GFRSHRGSRE KGLRTEYVEC  240
FACSATKLAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674735.11e-158PREDICTED: transcription factor BEE 1-like
TrEMBLM0RLC00.0M0RLC0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-39bHLH family protein