PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P25590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 242aa    MW: 25669 Da    PI: 8.1148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P25590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.9e-09146186954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  GSMUA_Achr10P25590_001 146 ARHRRERISERIRILQQLVPGG-----TKMDTASMLDEAIHYMKFL 186
                             699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.51137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13138197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-14143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6147186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-6160191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDVDYLSSPT EAQMDLTTMV REMENLSGLS EAPLQPSESY SGGPSSHAFC SAGASTSLLV  60
GGAPSSSAFG GPQDLLAPVF SNSPAAAELA LRGASHGCGR RPSVAAMREM IFRIAAMQPI  120
HIDPESVRPP KRRNVKISKD PQSVAARHRR ERISERIRIL QQLVPGGTKM DTASMLDEAI  180
HYMKFLKSQL QSLQRAAAAH RGAGAAGNAD FSMHGTGSSD GSCSFFLKGD GAPEQGFTMN  240
TF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381828.21e-178PREDICTED: transcription factor HEC2-like
SwissprotQ9SND45e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLM0RLD31e-176M0RLD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P25590_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]