PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P25890_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

BBR-BPC

Protein Properties

Length: 225aa MW: 24456 Da PI: 10.3014

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P25890_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	32.5	2.5e-10	1	72	1	71
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalae.rn 71 md+dg rn+gyyep k nlglqlmss aer++k+ ++ + +++ ++ e m+f rd ++++ r+ GSMUA_Achr10P25890_001 1 MDEDGGLGiRNWGYYEPP--SKGNLGLQLMSSAAERNTKPLQSGGGFFHRDCSIPEPSvqMDF-GRDGWIHHgRD 72 999999999*****99..799*************99999898888888665455999.9***98333 PP
2	GAGA_bind	249.4	2.4e-76	84	223	158	300
GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244 +k++kakk+kk ++k+++++ s + ++ +s ++v+ng++lD+s++P+PvCsCtG+++ CY+WG+GGWqSaCCtt+iS+yPL GSMUA_Achr10P25890_001 84 PQKSSKAKKPKKVA-APKDETTNGS--VSHGKSSRSSGMVINGITLDISGIPTPVCSCTGKPQPCYRWGAGGWQSACCTTSISMYPL 167 45777778888844.4444433333..2345556788************************************************ PP GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 P+stkrrgaRiagrKmSqgafkk+LekL++eG++lsnp+DL+ WAkHGtnkfvti GSMUA_Achr10P25890_001 168 PMSTKRRGARIAGRKMSQGAFKKVLEKLTEEGHNLSNPIDLRPLWAKHGTNKFVTI 223 *****************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	3.9E-11	1	85	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.0E-111	1	224	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-76	83	223	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDEDGGLGIR NWGYYEPPSK GNLGLQLMSS AAERNTKPLQ SGGGFFHRDC SIPEPSVQMD 60 FGRDGWIHHG RDSNKILEML PARPQKSSKA KKPKKVAAPK DETTNGSVSH GKSSRSSGMV 120 INGITLDISG IPTPVCSCTG KPQPCYRWGA GGWQSACCTT SISMYPLPMS TKRRGARIAG 180 RKMSQGAFKK VLEKLTEEGH NLSNPIDLRP LWAKHGTNKF VTISL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381005.1	1e-127	PREDICTED: protein Barley B recombinant-like
Swissprot	Q9SKD0	1e-68	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	M0RLG3	1e-166	M0RLG3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P25890_001	1e-167	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2211	36	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-59	basic pentacysteine 3