PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 335aa    MW: 36327.8 Da    PI: 8.4762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000482142521255
                             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             R +++ +++  L +++ +      +K + a++L +A+ YI+ Lq
  GSMUA_Achr10P26340_001 214 RKEKLGDRITALHQIVSPF-----GKTDTASVLLEAIGYIRFLQ 252
                             6678888999999999988.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575121No hitNo description
PROSITE profilePS5088811.579202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10212264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-5212256No hitNo description
Gene3DG3DSA:4.10.280.109.8E-8216259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNRGLFQNSV VQQMMGGSSG CRSMNSIRPP PDQTFPLLPS SSSSSSPSVY AQFPQPSAML  60
PITPLPDSQE LPESWSQLLL GGCWGEEEKY GLTPLQTRKI ETWEDQLLYP SAAAHVADVK  120
REYSGSGYLH GHGNEEEAKA SKAPWSQIMP ASSPRSCITT SFSRNMLDFS NKQPGRMHHQ  180
PDNSSVCNST AAGAALKKAR VQGASSAHSA FKVRKEKLGD RITALHQIVS PFGKTDTASV  240
LLEAIGYIRF LQSQVEALSS PYLSSASANT KQQPQLLNSS GSKKRGPPDQ HQEGNDEVKK  300
DLRSRGLCLV PVSFFLHVGT DTGADFWPPA LHGAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381048.10.0PREDICTED: transcription factor bHLH68-like isoform X1
TrEMBLM0RLK80.0M0RLK8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-48bHLH family protein