PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 287aa    MW: 31356.9 Da    PI: 4.7241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1870118355
                     AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             ++GVr+++ +g+++AeIrd +     r  r++lg+f taeeAa  ++ a+ +l+g
  GSMUA_Achr10P26480_001  70 FRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFNTAEEAAMVYDSAAIQLRG 118
                             8*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1169118IPR001471AP2/ERF domain
SMARTSM003807.5E-3269132IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2069126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-2869126IPR001471AP2/ERF domain
PROSITE profilePS5103222.44569126IPR001471AP2/ERF domain
PRINTSPR003678.2E-107081IPR001471AP2/ERF domain
CDDcd000184.80E-2377125No hitNo description
PRINTSPR003678.2E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
METTLLVPIT RTEHVDVTQK PVSPPQAKRG PLPAPPRTVR IFCDDFDATD SSGDDDLPCR  60
SRRRVRRYRF RGVRRRPWGK YAAEIRDPWR RVRVWLGTFN TAEEAAMVYD SAAIQLRGPG  120
AITNFSRTPA QPLKKNLSDN NLSSSICGGY DSGDESRNLS SPTSVLGGFP SSSSSSTSSS  180
SFSPSPSASG KEPPPGPQPA SERSLPEELL GDSMPFEGVP LLFDDFLRGL EPGYFDYSAP  240
IGFLAVEPSD GVIGARRDID LSQSTWQSDD CFEDIGDLFP IDPLPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-19691251471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16276RRVRRYRFRGVRRRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381842.11e-177PREDICTED: ethylene-responsive transcription factor CRF2-like
RefseqXP_018674932.11e-177PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUE34e-34CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM0RLM20.0M0RLM2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26480_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-25cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]