PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P26570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 233aa    MW: 25730.8 Da    PI: 8.8955
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P26570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.8e-211776357
                            --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++tkeq+ +Le l+++  r+psae++++++ kl    +++ ++V++WFqN++a++++
  GSMUA_Achr10P26570_001 17 SRWNPTKEQISVLEGLYKQgIRTPSAEQIQHITGKLreygNIEGKNVFYWFQNHKARQRQ 76
                            8*****************99**************************************97 PP
2Wus_type_Homeobox115.62.3e-371578265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +++RW+Pt+eQi +Le lyk+G+rtP++e+iq+it +L+eyG+ie+kNVfyWFQN+kaR+rqkq
  GSMUA_Achr10P26570_001 15 SSSRWNPTKEQISVLEGLYKQGIRTPSAEQIQHITGKLREYGNIEGKNVFYWFQNHKARQRQKQ 78
                            689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-13984IPR009057Homeodomain-like
PROSITE profilePS5007111.0461277IPR001356Homeobox domain
SMARTSM003898.3E-61481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-81776IPR009057Homeodomain-like
PfamPF000461.5E-181776IPR001356Homeobox domain
CDDcd000861.57E-61878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEGGKGSSSS SSSPSSSRWN PTKEQISVLE GLYKQGIRTP SAEQIQHITG KLREYGNIEG  60
KNVFYWFQNH KARQRQKQKQ ESFAYFSRLL QRAPPPVLPP TASSLPPLPT CTDGICPYTS  120
LIRVGGVGYF HPQFPNVIFP AAAKRTDFQK MGMIQGRNQT PSRAGCRNTD ESGHETLQLF  180
PLHPTGILER RPGSTPTSAS TEIESVEEDE GKEEVGGENQ PLFNFFGGAN KQC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381843.11e-155PREDICTED: WUSCHEL-related homeobox 5
TrEMBLM0RLN11e-172M0RLN1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P26570_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-37WUSCHEL related homeobox 2