PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 488aa    MW: 55159.4 Da    PI: 9.4241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18553153
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                            ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  GSMUA_Achr10P27000_001  5 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 53
                            59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-32564No hitNo description
Gene3DG3DSA:3.30.730.102.2E-32663IPR001471AP2/ERF domain
SMARTSM003801.2E-39669IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-20664IPR016177DNA-binding domain
PROSITE profilePS5103221.878663IPR001471AP2/ERF domain
PfamPF008472.5E-11650IPR001471AP2/ERF domain
PRINTSPR003675.0E-10718IPR001471AP2/ERF domain
PRINTSPR003675.0E-102945IPR001471AP2/ERF domain
PfamPF031053.2E-8220254IPR004331SPX domain
PROSITE profilePS5138228.149220366IPR004331SPX domain
CDDcd144813.40E-82221355No hitNo description
PfamPF031054.7E-11316368IPR004331SPX domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070417Biological Processcellular response to cold
GO:0080040Biological Processpositive regulation of cellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPVPRTPEG DAAADASSKA LSEVLSAKLR KCCKTTPSSS LTCLRLDTEK SHIGVWQKRP  120
GTRDGSSWVM TVELGNASHG RQDAGEAMMA PTSPLAVEGA YAVPPSNIPS LRPRHIPIPP  180
FPFAPSIAIT FLRPSSSSYI TACLFPTLDF DRRKVWYLEM KFGKSLGNQI EDALPEWRDK  240
FLSYKDLKKR LKLISGGGGE RLAKRPKEED DFMRLLEAEL DKFNTFFVEK EEEYIIRQKD  300
LQDRVVEAIS KDSKEELMKV RKEIVDLHGE IVLLENYSAL NYTGLAKILK KYDKRTGALI  360
RQPFIQKVLQ QPFFTTDVLY KLVKECEAML DRLFPKIETS TSVEDCDGQN REQKPAKPRS  420
SLVGGVPESE EIEYMESSYM KSTIAALRAM KEIRGGSSTV SFFSLPPLKS NGLEERWNNV  480
PVLEQAAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-15564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-15264164ATERF1
3gcc_A7e-15264164ATERF1
5wx9_A3e-146631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in plant adaptation to phosphate starvation (PubMed:19000161). Inhibits PHR2 DNA-binding activity via a Pi-dependent protein interaction (PubMed:25271318). Suppresses the regulation on expression of PT2 by PHR2 and accumulation of shoot Pi (PubMed:20149131). Optimizes growth under phosphate-limited conditions through a negative feedback loop of the PSI (phosphate starvation-induced) signaling pathway (PubMed:19000161, PubMed:20149131). Regulates the expression of SPX2, SPX3 and SPX5 (PubMed:19566645). May be an important link between signal transduction pathways related to phosphate starvation and cold stress (PubMed:19000161). {ECO:0000269|PubMed:19000161, ECO:0000269|PubMed:19566645, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:25271318}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under phosphate starvation (PubMed:19566645, PubMed:19000161). Up-regulated during cold stress (PubMed:19508276). Under negative feedback regulation by PHO2 (PubMed:20149131). Up-regulated by the transcription factor PHR2 (PubMed:25271318). {ECO:0000269|PubMed:19000161, ECO:0000269|PubMed:19508276, ECO:0000269|PubMed:19566645, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:25271318}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381117.10.0PREDICTED: SPX domain-containing protein 1
SwissprotQ69XJ01e-127SPX1_ORYSJ; SPX domain-containing protein 1
TrEMBLM0RLS40.0M0RLS4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27000_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-54ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang C, et al.
    Involvement of OsSPX1 in phosphate homeostasis in rice.
    Plant J., 2009. 57(5): p. 895-904
    [PMID:19000161]
  3. Zhao L, et al.
    Increased expression of OsSPX1 enhances cold/subfreezing tolerance in tobacco and Arabidopsis thaliana.
    Plant Biotechnol. J., 2009. 7(6): p. 550-61
    [PMID:19508276]
  4. Wang Z, et al.
    Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice.
    J Integr Plant Biol, 2009. 51(7): p. 663-74
    [PMID:19566645]
  5. Zhang Q,Wang C,Tian J,Li K,Shou H
    Identification of rice purple acid phosphatases related to phosphate starvation signalling.
    Plant Biol (Stuttg), 2011. 13(1): p. 7-15
    [PMID:21143719]
  6. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  7. Wang C, et al.
    Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings.
    PLoS ONE, 2013. 8(12): p. e81849
    [PMID:24312593]
  8. Zhang K, et al.
    Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1661-72
    [PMID:26806409]
  9. Cao Y, et al.
    Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.
    BMC Plant Biol., 2016. 16(1): p. 210
    [PMID:27716044]