PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P27810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 305aa    MW: 33798.8 Da    PI: 5.4765
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P27810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.32.6e-291859102
                             HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
            HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                             +++d++++ +i w +++nsfvv+d+  f++ +Lp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  GSMUA_Achr10P27810_001   1 MVDDPSTNAVIAWGRDNNSFVVVDPFAFSQLLLPSHFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTNLLR 78 
                             899*******************************************************999.........***************** PP

                             XXXXXXX CS
            HSF_DNA-bind  96 kikrkks 102
                              i r++s
  GSMUA_Achr10P27810_001  79 LIVRRNS 85 
                             ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-25183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-28183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-39183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVDDPSTNAV IAWGRDNNSF VVVDPFAFSQ LLLPSHFKHG NFSSFVRQLN TYGFRKVDPD  60
RWEFAHASFL RGQTNLLRLI VRRNSGCGKK NERGEEEGEE EEGMEERVAA EVVRLKQEQR  120
RIAERVEEMW RRVQETERKP RQMLAFLVKV AGDPKLLGRL GAGPAPGAIE GGEKRARLRS  180
GDEYERVLEM EGGVGRWQFD GQSMVAGDGE EGMMLCGGDG GGAHQFPGTS DPIGFYGGPV  240
WVGGEFGGVE GDGLGGGSAA YPFPSHPAFN KATDHESLYF GIKKCLHLNQ QNVFDFYAKI  300
SCENY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1918336129Heat shock factor protein 1
5d5v_B3e-1918336129Heat shock factor protein 1
5d5v_D3e-1918336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381200.10.0PREDICTED: heat stress transcription factor C-2b-like
SwissprotQ6EUG42e-72HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLM0RM050.0M0RM05_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P27810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-46heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]