PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P29790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 261aa    MW: 28376.3 Da    PI: 7.2439
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P29790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.2e-323893357
             ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                            ++ Y+eClkNhAaslGgha+DGCgEfm s+ ++ +++++l+C ACgCHRnFHRr +
  GSMUA_Achr10P29790_001 38 EFLYRECLKNHAASLGGHALDGCGEFMHSPAADpADPSSLRCVACGCHRNFHRRLP 93
                            679*****************************99*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-263991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5754192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.9E-294191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-204188IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS00028079103IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.10.602.7E-27139201IPR009057Homeodomain-like
SuperFamilySSF466891.43E-16140200IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-21143199IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDHTTKVAEP ETEGKTLSFP NGTLRKHHQR QPATAVEEFL YRECLKNHAA SLGGHALDGC  60
GEFMHSPAAD PADPSSLRCV ACGCHRNFHR RLPDPLHHRH RLHDREGEDE RNREGGDEEE  120
PIVTPIAAVA AATPMAADVA QPRKRFRTRF TPGQKERMQE LSERLGWRMQ KRDEGQVEEC  180
CRQIGVDKGV FKVWMHNNKH AFFGQARKGG AGGGCGGSRT GNGVDGGDVV GRVEETSHSA  240
NGVDDSGGGN GHAMNGSSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-171442011875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381426.11e-168PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG01e-53ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM0RMK30.0M0RMK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P29790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-25homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]