PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P29940_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 383aa MW: 43077.9 Da PI: 8.651

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P29940_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.3e-06	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F r nL+ H+r+H GSMUA_Achr10P29940_001 63 YVCAICNQGFQRDQNLQMHQRRH 85 9*********************9 PP
2	zf-C2H2	16.9	1.8e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ GSMUA_Achr10P29940_001 140 WVCDKCSKAYAVQSDYKAHLKTC 162 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.31E-6	62	85	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.3E-6	62	85	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	63	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	63	85	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
SMART	SM00355	90	104	134	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.2E-4	131	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.31E-6	135	160	No hit	No description
SMART	SM00355	56	140	167	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLGSPLLASQ QPCDGTTVSS PQPLVSINDA TNAKKKRRPV GTPDPDAEIV SLSPRALLES 60 ERYVCAICNQ GFQRDQNLQM HQRRHKVPWK LLKREATEVR KRVYVCPEPT CLHHDPRHAL 120 GDLVGIKKHF RRKHSSHRQW VCDKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES 180 FIEHQGTCAA GRARAELHIP MTWPILIRTP NPTAAVFLTL PDQPSSAQLD KHCTRNIELQ 240 LLPPSGNQNL ALSSSASSPA TEDAETMEQL KLAMAEKVLA DEARHHARQH LGLAQHEFET 300 AKRIRQQAQL ELNRAYAIRE HALKQINSTL IHITCYACKQ RFPEKPAMAS EENSFVVSYM 360 SSAVTEGEEE NEDHDRQQKI SKS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLGSPLLASQ QPCDGTTVSS PQPLVSINDA TNAKKKRRPV GTPDPDAEIV SLSPRALLES  60
ERYVCAICNQ GFQRDQNLQM HQRRHKVPWK LLKREATEVR KRVYVCPEPT CLHHDPRHAL  120
GDLVGIKKHF RRKHSSHRQW VCDKCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES  180
FIEHQGTCAA GRARAELHIP MTWPILIRTP NPTAAVFLTL PDQPSSAQLD KHCTRNIELQ  240
LLPPSGNQNL ALSSSASSPA TEDAETMEQL KLAMAEKVLA DEARHHARQH LGLAQHEFET  300
AKRIRQQAQL ELNRAYAIRE HALKQINSTL IHITCYACKQ RFPEKPAMAS EENSFVVSYM  360
SSAVTEGEEE NEDHDRQQKI SKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-17	138	190	5	57	Zinc finger protein JACKDAW
5b3h_F	2e-17	138	190	5	57	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	37	KKKRR
2	33	38	KKKRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833680	1e-131	CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381443.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-129	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	M0RML8	0.0	M0RML8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P29940_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-129	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]