PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P30290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 229aa    MW: 23778.4 Da    PI: 7.5556
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P30290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1001.7e-3168122459
             ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              rY+eClkNhA+ +GghavDGCgEfm++ g+eg+ +al+CaACgCHRnFHR+++ee
  GSMUA_Achr10P30290_001  68 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GAEGSLDALRCAACGCHRNFHRKDPEE 122
                             59*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015665.0E-2969119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2869120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.62970119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2072121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.02E-19155227IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-32156228IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-25166223IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDFDDHDEGE EEMDLPMGSS YDTPMENSGR GGGGGGGAKM GGGGESAGTM AVGGSGHRKA  60
YGGGGGRGRY RECLKNHAVG IGGHAVDGCG EFMAAGAEGS LDALRCAACG CHRNFHRKDP  120
EEGGAGGGGA SWGGGAMEIS GYHSQAAPLA LPSTGGGMAA SGSGARKRFR TKFTQEQKDK  180
MLAFAERLGW RIQKHDEAAV QQFCEETCIK RHVLKVWMHN NKNTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-291672241875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381483.11e-116PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2592e-73ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH52e-73ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM0RMQ31e-164M0RMQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P30290_0011e-165(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]