PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P30300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 309aa    MW: 33897.2 Da    PI: 6.7127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P30300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.6e-12111162155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ +  Lr l+P +   + ++ + a+i   A++++k+L+
  GSMUA_Achr10P30300_001 111 QRMTHIAVERNRRKQMNEYLGALRCLMPAS---YVQRGDQASIIGGAINFVKELE 162
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-12109166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-11109166No hitNo description
SuperFamilySSF474591.57E-15110175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.411110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-8116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MALEAVVFSR DLHGCTMKER YNVGGAAWCR AFAEQKGMES ECEVGSGKHG SLDAPCTSLT  60
PKTDARGANT PPPGTAAKDG TDGTAGHEAP AGRRKRRRTK TFKNQEEVEN QRMTHIAVER  120
NRRKQMNEYL GALRCLMPAS YVQRGDQASI IGGAINFVKE LEQLVQSLEA RKRIEQTADA  180
APFADFFTFP QYSTTASRGA NNGPAGEEAQ ENRPALADIE VTMVETHANL KVLSRRRPKQ  240
LLKMVAGLHD LRLTILHLNV TTVAEMAFCS FSLKVEDDCQ LSSVDDIATA VHELVGTIQE  300
EADRDTTTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19397RKRRR
29398RKRRRT
3111122RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076266e-32AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588616e-32HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381484.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK917e-72BH094_ARATH; Transcription factor bHLH94
TrEMBLM0RMQ40.0M0RMQ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P30300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]