PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P30500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 351aa MW: 40010.8 Da PI: 8.8173

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P30500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.2e-11	63	95	2	34
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeek 34 +++k+ rr+++NReAAr+sR+RKka++++Le GSMUA_Achr10P30500_001 63 SSDKVLRRLAQNREAARKSRLRKKAYVQQLESS 95 589***************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-8	57	111	No hit	No description
SMART	SM00338	7.5E-5	62	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.864	64	108	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	64	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.74E-7	66	104	No hit	No description
CDD	cd14708	2.31E-21	66	118	No hit	No description
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-29	153	227	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGIYEPDHHI GMWWEDSIKT DSCQNICTSP AAETDMRLVY MLEDIPHKEL TQPKDHDQET 60 NKSSDKVLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLC QLEQELEQVR QKGIYIGGRL 120 GERTLGLSGS VNSGIAAFEM QYGHWVEKQN QQTCQLRAAL QAHASDFELH MLVKSGIRHY 180 DNLFRIKAIT AKSDVFYLMS GMWRTPTERF FLWIGGFRPS KLLKVLSSQL NPLTEQQMRA 240 VTGLQQCSQQ AEDALSQGLD KLQQTLSETL ACDPFGTFGA KNYMGQMAIA MTKLEALVSF 300 VNQADHLRQQ ALQQMYNILT TRQSARGLLA LGDYFQCLRT LSSLWATRPP S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGIYEPDHHI GMWWEDSIKT DSCQNICTSP AAETDMRLVY MLEDIPHKEL TQPKDHDQET  60
NKSSDKVLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLC QLEQELEQVR QKGIYIGGRL  120
GERTLGLSGS VNSGIAAFEM QYGHWVEKQN QQTCQLRAAL QAHASDFELH MLVKSGIRHY  180
DNLFRIKAIT AKSDVFYLMS GMWRTPTERF FLWIGGFRPS KLLKVLSSQL NPLTEQQMRA  240
VTGLQQCSQQ AEDALSQGLD KLQQTLSETL ACDPFGTFGA KNYMGQMAIA MTKLEALVSF  300
VNQADHLRQQ ALQQMYNILT TRQSARGLLA LGDYFQCLRT LSSLWATRPP S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF582556	0.0	KF582556.1 Musa acuminata AAA Group cultivar Cavendish transcription factor tga1 (TGA5) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381522.1	0.0	PREDICTED: transcription factor TGAL6 isoform X6
Swissprot	A0A0P0WFC8	1e-140	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	M0RMS4	0.0	M0RMS4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P30500_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-133	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]