PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P00260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 219aa MW: 24309.3 Da PI: 10.2275

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P00260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.9	1.5e-19	75	166	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 Wt++e+laLi a+r+++ +lrrg+l++ +W+ev++ + ++ +qC++k e+l+kry+ +++ + + ts s+++yf GSMUA_Achr11P00260_001 75 WTHEEILALIGAYRDKWYALRRGNLRASHWQEVADDVadrcpPGSSPPKTYIQCRHKVEKLRKRYRSERRKSLQFdTSLPPSSWVYF 161 ***********************************77765555668999************99988877699999** PP trihelix 83 dqlea 87 ++++a GSMUA_Achr11P00260_001 162 RKMHA 166 *85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-19	75	166	No hit	No description
SMART	SM00595	2.1E-4	82	172	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAFSVDASSP KKDPPSPAVL AASAAAEAAA SRCQSPSPSP SPSPERSASL LPLPASLPPP 60 LPSSSATRRL AAPIWTHEEI LALIGAYRDK WYALRRGNLR ASHWQEVADD VADRCPPGSS 120 PPKTYIQCRH KVEKLRKRYR SERRKSLQFD TSLPPSSWVY FRKMHATEHG GNVEVGETHR 180 PSDCQSSVPP HPPSSDDGWR REQHPKSPPP HDQRRLRDR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384106.1	1e-53	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	M0RN57	1e-154	M0RN57_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P00260_001	1e-155	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5689	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-30	Trihelix family protein