PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 235aa    MW: 26673 Da    PI: 5.1058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd+ll d++++ G  +W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr11P00410_001 14 KGPWSPEEDQLLMDYIQRNGHANWRALPKQAGLLRCGKSCRLRWTNYL 61
                            79******************************99************97 PP
2Myb_DNA-binding46.58.5e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+ E++ ++ ++++lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr11P00410_001  67 RGNFTEAEEDAIIGLHRELGNK-WSAIAARLP-GRTDNEIKNVWHTHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.315961IPR017930Myb domain
SuperFamilySSF466891.92E-2911108IPR009057Homeodomain-like
SMARTSM007175.5E-121363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001672.45E-81661No hitNo description
PROSITE profilePS5129424.17662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2565115IPR009057Homeodomain-like
SMARTSM007171.9E-1266114IPR001005SANT/Myb domain
PfamPF002498.3E-1467112IPR001005SANT/Myb domain
CDDcd001672.53E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRAPCCQKV GLKKGPWSPE EDQLLMDYIQ RNGHANWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TEAEEDAIIG LHRELGNKWS AIAARLPGRT DNEIKNVWHT HLKKRANPEE  120
ATQESKRKMK RNAKASSESE QEEDLQPASP KEEEDGFSSE KVEGIDESFW LEALSIDEFA  180
AMEAPCAAAA SSNTLSLFSS TNSCDMEFWL DIFVREAEFL ENLPPQINPP DIRVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383020.11e-175PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX85e-74MYB14_ARATH; Transcription factor MYB14
TrEMBLM0RN721e-173M0RN72_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00410_0011e-174(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-74myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]