PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 375aa    MW: 41596.2 Da    PI: 8.2761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W+++Ede+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr11P00430_001 14 KGLWSPDEDEKLIKHISKHGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                            678*******************************************97 PP
2Myb_DNA-binding47.44.5e-1567110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg ++++E++l++++++ lG++ W++Ia +++ gRt++++k+ w++
  GSMUA_Achr11P00430_001  67 RGTFSQQEEDLIIELHAVLGNR-WSKIAVHLP-GRTDNEIKNLWNS 110
                             899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.41965IPR017930Myb domain
SuperFamilySSF466894.49E-2912108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-161461IPR001005SANT/Myb domain
CDDcd001672.11E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129419.8566116IPR017930Myb domain
SMARTSM007174.9E-1366114IPR001005SANT/Myb domain
PfamPF002491.1E-1367110IPR001005SANT/Myb domain
CDDcd001674.90E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGGHSCCYKQ KLRKGLWSPD EDEKLIKHIS KHGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAVHLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPITHEPLA EVDGSDDKFP INSEKNNSGS SGLQIPANAK LTMHVGKSPT SYFSLPLLSF  180
APDYTSGQTT SAAPPICSKP LLCVSNWYSG NCSNSRRSSA VNDSGGVMLQ SSCSYDSGIF  240
PWSELTPDKD VQVQLGGEAE DLRWSEYLHG AFPVSSAMPT QSQPLFGDKI KSGGQFTFHG  300
FSTWHQTQQL QPQLPPSDTS GKDFQSVHIL FLIHTGLMLQ QLHQPSSSVY MFVVGSLFAV  360
FFNGLAFMVL HSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381957.10.0PREDICTED: transcription factor MYB122-like
TrEMBLM0RN740.0M0RN74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00430_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-86myb domain protein 61