PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P00500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YC

Protein Properties

Length: 106aa MW: 12162.2 Da PI: 11.4556

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P00500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	31.9	2.9e-10	1	82	23	99
NF-YC 23 larikkilk.....adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++r++++++ a+ ++ is++a l+ ka e+f+ ++ s+ + +++++ d++++v + + ++fl d vp++ GSMUA_Achr11P00500_001 1 MSRVRRLMRleggnANVTISGISSDAVFLVNKASEMFLEKFVKDSFSRGMRRQKKSVTYKDLSSTVHSKKRYEFLSDFVPEK 82 589999998222223445677**********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.0E-15	1	81	IPR009072	Histone-fold
Pfam	PF00808	5.0E-8	1	65	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.29E-14	19	82	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MSRVRRLMRL EGGNANVTIS GISSDAVFLV NKASEMFLEK FVKDSFSRGM RRQKKSVTYK 60 DLSSTVHSKK RYEFLSDFVP EKVKAEDALK ARALVVGRRT RRPLHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381965.1	3e-63	PREDICTED: uncharacterized protein LOC103970056
TrEMBL	M0RN81	6e-70	M0RN81_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P00500_001	1e-70	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	6e-24	nuclear factor Y, subunit C10