PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P00670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB_related

Protein Properties

Length: 224aa MW: 24940.2 Da PI: 8.6289

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P00670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	8e-15	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+rt+ ++Rt+ q+ s+ qky GSMUA_Achr11P00670_001 97 PWTEEEHRTFLTGLEKLGKGDWRGISRTFVTTRTPTQVASHAQKY 141 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.491	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	6.53E-18	91	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-18	93	145	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-9	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	96	141	IPR009057	Homeodomain-like
CDD	cd00167	5.10E-10	97	142	No hit	No description
Pfam	PF00249	2.4E-11	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASAMEEERE GGKSEKVLKL FGVSIVRGEV GGKEEADAEE EEVMRKSSSM GNLASCAAVP 60 LVIDHGAGDQ GYHSDGAILQ SATGRRRRCQ ERKRGVPWTE EEHRTFLTGL EKLGKGDWRG 120 ISRTFVTTRT PTQVASHAQK YFLRKNNPRK KKHRSSLFDV TINDEVNPNF PLACTPDLKL 180 SLSYPNCQTQ SSATTPAEIS DLELKIAPPR RHDLSYLLMV QQVQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383025.1	1e-101	PREDICTED: uncharacterized protein LOC103970821
Swissprot	B8BI93	2e-41	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	2e-41	MYBS2_ORYSJ; Transcription factor MYBS2
Swissprot	Q9FKF9	1e-40	M5162_ARATH; Probable transcription factor At5g61620
TrEMBL	M0RN98	1e-167	M0RN98_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P00670_001	1e-167	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	2e-38	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]