PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 459aa    MW: 49833.6 Da    PI: 9.9052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05208230223
                             EETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              C+ Cg++F+ +++L+ H+   H
  GSMUA_Achr11P00820_001 208 ACSECGEVFTKPDSLELHQAIrH 230
                             6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
PROSITE profilePS501579.577207235IPR007087Zinc finger, C2H2
SuperFamilySSF563997.0E-20232279No hitNo description
Gene3DG3DSA:3.90.228.101.1E-11233457IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563997.0E-20309456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEHRDHNTTG KRIQRERERE REREIGVLMV EKRPLVLIHL LAALLLMALT SLLPAAAPTS  60
HHHHHSDDEH ERKKKKKKPP PTPRTRTLSP PSSSSSSWEQ FKSLLSCRST AATQVHDPSS  120
TAARLGRAAC GSSICAIRDV VHGNTRTAPL ARATRSARHQ PPVSSLGCGS HSRGGIQLRK  180
LSGCYECHAV SIEPSSRRYP RPRTTLCACS ECGEVFTKPD SLELHQAIRH AVSELAPEDS  240
GRNIVEIIFK SSWQKKDRPI CKIERILKVH SAPRTVARFE DYRAAVKSRA LPHLSSFSAS  300
GAAARHHPSR CAADGNELLR FHCTSLSCPL GARGSTSLCP NSSSSSPSSS CGVCTIIRHG  360
FARAQYPHGV RTTASSGRAH DSGPSAAAED GRGERRAMLV CRVIAGRVRR TPDDPAAEEA  420
YDAVAVGDGC GAYGNLEELI VANPRAILPC FVVIYRAVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076ERKKKKK
27078ERKKKKKKP
37177RKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381996.10.0PREDICTED: uncharacterized protein LOC103970083
TrEMBLM0RNB30.0M0RNB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-93C2H2-like zinc finger protein