PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P02110_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 211aa MW: 23301.3 Da PI: 5.4706

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P02110_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.9	2.9e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++Cv+ap f +eq +++fa++hk+FGasnv kll +lp +r++a+ ++ yeA+ar+++P+yG+v++i++lqqq GSMUA_Achr11P02110_001 7 PCGACKFLRRKCVSGCVFAPFFHHEQgAAHFAAIHKVFGASNVAKLLMHLPMADRSEAAITISYEAQARLQNPIYGCVAHIFALQQQ 93 7**********************989******************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+a++a+l+++ GSMUA_Achr11P02110_001 94 VVNLQAQVASLEAQ 107 ******999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.667	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-36	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAGFGSPCGA CKFLRRKCVS GCVFAPFFHH EQGAAHFAAI HKVFGASNVA KLLMHLPMAD 60 RSEAAITISY EAQARLQNPI YGCVAHIFAL QQQVVNLQAQ VASLEAQAAQ GLGNGMTASL 120 NREEDRLYSA LQPRQHDLQG FIDQARPFSS SPPSDVECMN SYNNWISEVN FDMADEDLAL 180 GIENETLSPM ACFDMQDDFW KSVYHDANVR H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-33	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-33	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009382150.1	1e-158	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q5UG13	9e-65	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	M0RNP1	1e-157	M0RNP1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P02110_001	1e-158	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	5e-50	LBD family protein

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]