PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P02150_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 172aa MW: 19031.8 Da PI: 5.603

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P02150_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H+++H GSMUA_Achr11P02150_001 34 YECTFCKRGFSNAQALGGHMNLH 56 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.19E-6	31	61	No hit	No description
Pfam	PF13912	1.5E-5	33	58	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.011	34	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAEGRNKDSK PSSDETGSAE PRMDDSGGTR RPYYECTFCK RGFSNAQALG GHMNLHRKHR 60 TRERQSPATP SVMERTEDDY AGNNSAFCPH PYEPFRGYTY FPSSSLSYNG SDVRMGTDSG 120 LQAPYEMSLF GGELRMGSST HVDGPVAVAG EGRRQEVEDA ELDLELRLGH QP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383042.1	1e-125	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	M0RNP5	1e-124	M0RNP5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P02150_001	1e-125	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	8e-17	C2H2 family protein