PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P02160_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 207aa MW: 22564 Da PI: 6.5092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P02160_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GSMUA_Achr11P02160_001 53 YSCSFCRREFRSAQALGGHMNVH 75 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.14E-6	50	80	No hit	No description
PROSITE profile	PS50157	11.302	53	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MERYVRSTRD DDNSNNHNSK GKETWMSCSH YGRGGAPLSG GSLGGFSWPQ RSYSCSFCRR 60 EFRSAQALGG HMNVHRRDKA RLRESPPSGP SLLNTNPNPN LGSTPIPNLN MPPPSSATGN 120 RRHTPMTCEL PSELSPLIHL SPSSASTSTG EGLKIMETGK ALSGIEEFKD LDEEGSKVVS 180 LDLEIGVSGD YGYVDDLDLE LRLGYTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	6e-12	48	75	2	29	superman protein
2l1o_A	6e-12	48	75	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018676078.1	1e-151	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	M0RNP6	1e-150	M0RNP6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P02160_001	1e-150	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4667	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	2e-27	C2H2 family protein