PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P02230_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 340aa    MW: 37421.5 Da    PI: 8.7152
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P02230_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.6e-07191213123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C+ Cgk F+r  nL+ H+r H
  GSMUA_Achr11P02230_001 191 HYCQVCGKGFRRDANLRMHMRAH 213
                             68*******************99 PP
2zf-C2H211.70.00077279302123
                             EEETTTT.EEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                             y+C+ C+ k Fs  s+L++H + +
  GSMUA_Achr11P02230_001 279 YVCNRCNlKQFSVLSDLRTHEKHC 302
                             9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.31E-6189216No hitNo description
SMARTSM003550.0039191213IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.715191218IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-7191217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SMARTSM00355150241274IPR015880Zinc finger, C2H2-like
SMARTSM0035524279301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDDILYSSAG AAASGTDQIT SSHALLYSLS VLREKVQQLE SCVSMMTSPN RTQQESIAMG  60
VSCAGIMIQE IILAASSLSC TLPQVGPSTA VAYEEPPPSD MKVESATAWM DHSSNNSLGI  120
TRKDDFFSSN NPSANSAIDV DNGSVTRDQI RKVKPPLDRA GMRKECSQGL SSNGYTIIEL  180
DAADLLAKYT HYCQVCGKGF RRDANLRMHM RAHGDEYKSA AALANPTKSS RSSSSGVALK  240
YSCPHDGCRW NRKHAKFQPL KSVVCAKNHY KRSHCPKMYV CNRCNLKQFS VLSDLRTHEK  300
HCGDLRWRCS CGTNFSRKDK LMGHVALFVG HTPEPCRLRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382160.10.0PREDICTED: zinc finger protein STAR3-like
SwissprotQ0WT241e-101STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLM0RNQ30.0M0RNQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P02230_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-103C2H2 family protein