PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P02250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 193aa    MW: 20624.4 Da    PI: 8.6888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P02250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00165880123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C+k+F++   L  H  +H
  GSMUA_Achr11P02250_001 58 YECKTCSKCFPSFQALGGHRTSH 80
                            99**********99998888777 PP
2zf-C2H214.50.0001106128123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++Cg  Fs+   L  H+r+H
  GSMUA_Achr11P02250_001 106 HECSICGSEFSSGQALGGHMRRH 128
                             78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-957128No hitNo description
PfamPF139124.4E-105782IPR007087Zinc finger, C2H2
SMARTSM003550.245880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3465885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-4104128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.2E-12105129IPR007087Zinc finger, C2H2
SMARTSM003550.02106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MANCLILLAQ GRAFDTGPKP EEHKDEAGGG GGGSEKFTSR KLIEAATTTN GKAGIYVYEC  60
KTCSKCFPSF QALGGHRTSH KKHKLAATTT TAEEKKLETP TKPKVHECSI CGSEFSSGQA  120
LGGHMRRHRP LAIADSQEAK KDKSFLSLDL NLPAPADDEL QRPPSPTLAL ATKRPFIFSA  180
SASAPALVVD CHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382162.11e-129PREDICTED: zinc finger protein ZAT5-like
TrEMBLM0RNQ51e-139M0RNQ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P02250_0011e-140(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-30C2H2 family protein