PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P02800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 383aa    MW: 41582.1 Da    PI: 8.9181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P02800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS162.73.1e-5010632317229
                    GRAS  17 lelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                             +e+a+a La l+  a+p+gd+ qRl+a++   L arl+   +++ ++ +  e     s e+laa+++++++sP++k+s ++aN aIl
  GSMUA_Achr11P02800_001 106 QEAAEANLAVLKRSANPRGDAEQRLTAMMFATLLARLNP--PRTGRSKAIAELC---SGEHLAATQMLYDLSPCFKLSLIAANFAIL 187
                             6799***********************************..5555444444444...88**************************** PP

                    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefn 179
                             eav+ + ++Hi+D+d++qG Q+ aL++aLa+R       + pp ++iT+v++p++      ++ +l+e+g r+ak+Ae+ gv ++f+
  GSMUA_Achr11P02800_001 188 EAVKDQPKIHIVDLDVGQGRQYDALIHALADRHrcrpssARPPAVKITAVADPTTLlygnyDASSLSEVGGRIAKLAERAGVGLRFT 274
                             ******************************999777766669***********998999**************************** PP

                    GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLk 229
                             + v++r ++l+  +L  +pgEalaVnl++ l r+ desvs +++rde+L+
  GSMUA_Achr11P02800_001 275 I-VSRRASELDAASLGYEPGEALAVNLAFVLSRVADESVSPANPRDELLR 323
                             9.8*********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.73164383IPR005202Transcription factor GRAS
PfamPF035141.1E-47106323IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEERRRQQLQ QMPFLRSVKQ RTHLASPVGR LASPARLPTP LKSTSSLTTV SSELAPQRRA  60
DFGPDKGSDA MRNRLQELER RLLLDDEEDE TCASGSALTG AEWRGQEAAE ANLAVLKRSA  120
NPRGDAEQRL TAMMFATLLA RLNPPRTGRS KAIAELCSGE HLAATQMLYD LSPCFKLSLI  180
AANFAILEAV KDQPKIHIVD LDVGQGRQYD ALIHALADRH RCRPSSARPP AVKITAVADP  240
TTLLYGNYDA SSLSEVGGRI AKLAERAGVG LRFTIVSRRA SELDAASLGY EPGEALAVNL  300
AFVLSRVADE SVSPANPRDE LLRRSLDATV PRESGERERV EAGLARRAVN SVAREGADRD  360
EAGGVALGFG WMGRVLTVSS AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2010932622226GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382241.11e-177PREDICTED: scarecrow-like protein 8
TrEMBLM0RNW00.0M0RNW0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P02800_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-53SCARECROW-like 8