PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P03210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 172aa    MW: 18446.6 Da    PI: 4.3472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P03210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161262156
                     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            s y+G+r+++  g+Wv+eIr+p   gk  r++lg++ tae+Aa a++ a+ +l+g+
  GSMUA_Achr11P03210_001 12 SSYRGIRQRS--GKWVSEIREP---GKASRIWLGTYATAEMAAVAYDVAAHALRGA 62
                            67****9865..*********8...545*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-271270No hitNo description
PfamPF008471.3E-91261IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-191271IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-281370IPR001471AP2/ERF domain
SMARTSM003807.9E-291375IPR001471AP2/ERF domain
PROSITE profilePS5103220.0071369IPR001471AP2/ERF domain
PRINTSPR003679.0E-51425IPR001471AP2/ERF domain
PRINTSPR003679.0E-53551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGTGGEVAPR RSSYRGIRQR SGKWVSEIRE PGKASRIWLG TYATAEMAAV AYDVAAHALR  60
GADAVLNFPD EIATRPVPAS GSPTAIRSAA AEAATALLLR GTGIAAADDD DAVPQRPSEG  120
QYIDEDEIFD MPQLLVNMAE GMLMSPPRLS PSGPDDLPEV YEGESLWRWS YP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-151272163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-151274468ATERF1
3gcc_A5e-151274468ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382289.11e-119PREDICTED: ethylene-responsive transcription factor ERF024-like
TrEMBLM0RP011e-119M0RP01_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03210_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-28ERF family protein