PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P03780_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 317aa MW: 35953.6 Da PI: 7.3558

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P03780_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.4e-55	7	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka...eekewyfFskrdkkyatgkrknra 77 +ppGfrFhPt+eelv++yLkkkv+++ ++l ++ik+vd+yk+ePwdL+ + e++ewyfFs++dkky+tg+r+nra GSMUA_Achr11P03780_001 7 VPPGFRFHPTEEELVDYYLKKKVASRGIDL-DIIKDVDLYKIEPWDLQGiyrlhqqC--IsleEQNEWYFFSHKDKKYPTGTRTNRA 90 69**************************.99**********9456776652..0343667***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 t++g+Wkatg+dk+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle GSMUA_Achr11P03780_001 91 TAAGFWKATGRDKPIYS-KNSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 141 *************.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	5	163	IPR003441	NAC domain
PROSITE profile	PS51005	59.225	7	163	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	8	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDTFSHVPPG FRFHPTEEEL VDYYLKKKVA SRGIDLDIIK DVDLYKIEPW DLQGIYRLHQ 60 QCISLEEQNE WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKPIYSKNS LIGMRKTLVF 120 YKGRAPNGQK SDWIMHEYRL ESNESAPLQA SDKGWVVCRV FKKRMTATPI GRASGHDSAC 180 WYDDHASLVP ELDSPRQAGA RPGMAFLQLP QLESPKLPFD VGHAAALHPP AITQDDLMQY 240 SNKQLQVFST YNIAGATDHS VEQVTDWRVL DKFVASQLSH DGGVCKELHC STSEKPEVNA 300 ERASTSNCSA AQIELWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-48	6	164	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383067.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-109	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	M0RP58	0.0	M0RP58_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P03780_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-101	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]