PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P03960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 593aa    MW: 66563.8 Da    PI: 6.878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P03960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-103954331255
                             HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                             RR+++N++f  Lr+l+P+ +      K++Ka+iL  A++Y+k+L+
  GSMUA_Achr11P03960_001 395 RREKLNEKFVVLRSLIPSiS------KVDKASILDDATRYLKQLE 433
                             ******************66......*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5615198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.363383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11390438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-14394448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-10395437No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13395445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-8395433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDVGTIHEAL SPKHLRKQLA ATVREIQWSY AIFWSPSTGQ PGVLAWSDGY YNGDIKTRKM  60
TQPMELKADQ MGLQRSKQLR ELYGSLSAGD NNQQTRRPSA SLSPEDLTDA EWYYLVCMTF  120
TFTPGQGLPG KAFATNQHIW LNNAQFADSK IFSRSLLAKS ASIQTLVCIP FAGGVLELGT  180
TEKVLEDPAL IKQISSFFRE MPNPVGSEKS ASSPQMTEND EDILCPSLDN DVDSSMALEE  240
HDLMSVSPDD SSNNPWLGAL NSNECLPMPC VGAQRVVTSA KKEIVSNQML DGIEEGNCSK  300
HNSLELDGDG SRYAKTVAVI LRNSKPVLFF LTISRESSFV VWRRGLSTPK PFTGTPQTLL  360
KKILMDRRWL HGGHMEKAWR PEGESGGSYL LSEMRREKLN EKFVVLRSLI PSISKVDKAS  420
ILDDATRYLK QLERRVQELE SCRETAELSG RDRRKQHPDV SERTSDNYIH REITDGRKAS  480
ANKRKARDMD EAEAEHEHHC VEVSVTMKEK EVVVKMHCPW REYLLPEIVE SMSNLHLDPL  540
SVQSSTVDGM LAMTVKSKLR STTVASPVMI KRSLQRILEL TISSAYILLG FYV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-19151989192Transcription factor MYC3
4rqw_B1e-19151989192Transcription factor MYC3
4rs9_A1e-19151989192Transcription factor MYC3
4yz6_A1e-19151989192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2593130.0AM259313.1 Musa x paradisiaca partial bHLH1 gene for bHLH transcription factor-like protein, exons 1-2, genotype AAB/AAAB group, cultivar Sahab Kol.
GenBankAM2593150.0AM259315.1 Musa x paradisiaca partial bHLH1 gene for bHLH transcription factor-like protein, exons 1-2, genotype ABB/ABBB group, cultivar Boga Kas Kol.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382358.10.0PREDICTED: transcription factor EGL1-like
RefseqXP_009382359.10.0PREDICTED: transcription factor EGL1-like
TrEMBLM0RP760.0M0RP76_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-137bHLH family protein