PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P04980_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 157aa    MW: 17824.3 Da    PI: 8.058
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P04980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601231.5e-3861061101
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaC++lrr+C +dC+lapyfp+++p++fa+vh++FGasnv ++l+++p e+r++a++++++eA +r++dPvyG+vg+i+ lq+++
  GSMUA_Achr11P04980_001   6 RCAACRYLRRRCCEDCALAPYFPSANPHRFACVHRIFGASNVARMLQQIPVEHRRQAADAIAMEAYWRVQDPVYGSVGFISMLQREI 92 
                             6************************************************************************************** PP

                  DUF260  88 eqlkaelallkeel 101
                             + ++ ela++++++
  GSMUA_Achr11P04980_001  93 SVVQRELAETQAQI 106
                             *********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.0665106IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-386103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSNPTRCAAC RYLRRRCCED CALAPYFPSA NPHRFACVHR IFGASNVARM LQQIPVEHRR  60
QAADAIAMEA YWRVQDPVYG SVGFISMLQR EISVVQRELA ETQAQITMYA SQAQSQPNQI  120
AAAQCLVEDG HLVPSQPPFP GLYQRDDISQ ETLRRHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-33711012115LOB family transfactor Ramosa2.1
5ly0_B2e-33711012115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383083.11e-113PREDICTED: LOB domain-containing protein 24-like
SwissprotP594682e-41LBD24_ARATH; LOB domain-containing protein 24
TrEMBLM0RPH81e-112M0RPH8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P04980_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.13e-33LOB domain-containing protein 24