PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P05340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 659aa    MW: 73599 Da    PI: 5.8197
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P05340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.24.3e-09197220125
                 G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                             kpr++W++eLH++Fv av+qL G++
  GSMUA_Achr11P05340_001 197 KPRVVWSSELHQQFVTAVNQL-GID 220
                             79*******************.655 PP
2G2-like42.21.8e-132402682755
                 G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               Pk+ilelmkv gLt+e+v+SHLQkYRl
  GSMUA_Achr11P05340_001 240 IFPKKILELMKVAGLTRENVASHLQKYRL 268
                             57**************************8 PP
3Response_reg75.22.4e-25111191109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+ + +++++ +l+k +y +v++++ +  al +l+e++  +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ 
  GSMUA_Achr11P05340_001  11 VLLVDDDATCLKIIEMMLRKCHY-DVTTCSCAVTALSMLRERKgwFDLVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDHKDV 95 
                             89*********************.***************998888**********************6654.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +e l +
  GSMUA_Achr11P05340_001  96 VMKGVTHGAVDYLIKPVRIEPLKN 119
                             *****************9998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1492647IPR017053Response regulator B-type, plant
SuperFamilySSF521727.4E-368139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.3E-418152No hitNo description
SMARTSM004481.4E-309121IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.710125IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.9E-2211119IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.18E-2712124No hitNo description
SuperFamilySSF466892.51E-15195272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-27195273IPR009057Homeodomain-like
PfamPF002499.3E-6199267IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-11239268IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MPTEFPAGLR VLLVDDDATC LKIIEMMLRK CHYDVTTCSC AVTALSMLRE RKGWFDLVLS  60
DVYMPDMDGF KLLEHIGLEM DLPVIMMSAD DHKDVVMKGV THGAVDYLIK PVRIEPLKNI  120
WQHVVRKKRF ELKELEHSGS FEENQRESER HKRAMEECDN ATSGCGENLK NIKRKKEGKE  180
EDEQDVDEQA DPSQTKKPRV VWSSELHQQF VTAVNQLGID KLCILSHQTI DFIFIILAKI  240
FPKKILELMK VAGLTRENVA SHLQKYRLYL RRLSVPQHQD RLDGPFTSAQ DATFRSVGTV  300
DGFDLQALAV SGQLLPQNLS ALSSGSRRVT NTGLRMPVFD QMGFLNSGNA SSTRSASVQQ  360
MNRGLGYFSG FSNSIESRQL GQSHQLVEPY GNMCSQPFPR GQIFNGIGGH DSRLSSKFGY  420
QMSPNDISSH ISGRTANIAQ TPMPGNHISA SYSSVPEALY ANNIHDSCLT ESAASHYPLA  480
SSIGDTPTTG NVEALSNTSS LKGVTDLSNC NIYSELRQNK TQDWKLKTVN ISYQSGQNLA  540
PKQNNADFGS SLVAHQDSIA TVQDESSRNT CTVRKEILSV TTEIENEKIE CVAQRNSTIL  600
VENSIRLKSE SMPDIKHQEV LYDNIISNDL MDVGKQQQEG IEQDDPEFFD AYSLENIPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15196274464ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382514.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
TrEMBLM0RPL40.0M0RPL4_MUSAM; Two-component response regulator
STRINGGSMUA_Achr11P05340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-121response regulator 2