PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P05700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 414aa    MW: 45114.5 Da    PI: 10.3306
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P05700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0579101123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++C+k F r  nL+ H r H
  GSMUA_Achr11P05700_001  79 FVCEICHKGFQRDQNLQLHRRGH 101
                             89*******************88 PP
2zf-C2H212.40.00047155177123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC +C+k +  +s+ k H +t+
  GSMUA_Achr11P05700_001 155 WKCDKCSKKYAVQSDWKAHSKTC 177
                             58*****************9998 PP
3zf-C2H210.80.0015185203523
                             TTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                             dCg+ Fsr++++++H   +
  GSMUA_Achr11P05700_001 185 DCGTIFSRRDSFVTHRAFC 203
                             8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-578101No hitNo description
SMARTSM003550.04679101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63779101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355290120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4142176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-5150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSNITGDGGS FSSGTNTGED EVHKQRRLFY GSPAAAANID IAASQLLPVK KKRSLPGTPD  60
PNAEVIALSP TTLMATNRFV CEICHKGFQR DQNLQLHRRG HNLPWKLRQR SSAETRKRVY  120
VCPEPTCVHH HPTRALGDLT GVKKHYCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGSR  180
EYKCDCGTIF SRRDSFVTHR AFCDALAQEN HKLSQPLMAT MASSLQGHVP GLTMPVQLTD  240
TDHLMPGYMA GGTLSAFSNP PSTSNVRSPM GLDGLIEAQM SRPMAHVSAT APCIPFKAHE  300
LSYQMVGVGG ARSGDQFWDA DGSLKHTVDF LGVRGERRLH CARRRSPLVR RVGFHGSPSA  360
AAAAAAIAPP RSVLVVAAEG GGQRGGAVAS APLLQPGPRL LRRWHRQGLP DLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34151214366Zinc finger protein JACKDAW
5b3h_F3e-34151214366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382551.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLM0RPQ00.0M0RPQ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P05700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-99C2H2 family protein