PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P06170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 336aa    MW: 37231.9 Da    PI: 9.505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P06170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.3e-101842175790
                             TEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3  57 gryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                             ++yv+tkGW++Fvk+++L+++D+v F++ ++s++
  GSMUA_Achr11P06170_001 184 QSYVFTKGWNKFVKEKRLQAKDTVAFYRCEESDG 217
                             78*************************7766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.5134197IPR001471AP2/ERF domain
SMARTSM003803.0E-741103IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-104290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-114297IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.5E-7157182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15158219IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-13158211No hitNo description
SMARTSM010190.0048159231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-9183217IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-7184217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MATAVPAARE GPDSSCIFWG RASPFMAAAT GTSNDPNPST PYRGVMLLPD GHWGAQIYAR  60
GHRVWLGRFE SEIAAAGAFD SAAVKLHHGD YSHRNLPATR HAAHERRFQE TFSIDDVLDM  120
IRDGSYCSRL EEYTRLHAAP IRDLPHARTT SNVTFLEMFV KELTPSDVGK LNRLVIPKKH  180
ATHQSYVFTK GWNKFVKEKR LQAKDTVAFY RCEESDGHRR TYCMIDIIRH NSGGDRSGGS  240
SRSTSGVIGL GLGFKRKKME NGDEEDHCSC GFSRRKSGVM GVGLDLSLER VTAKKDDEGG  300
VVTGSAAPRK SSETQDKKKG LKLFGVWIAD ENDRRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383102.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLM0RPU70.0M0RPU7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P06170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1971158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-49RAV family protein