PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P07660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 261aa    MW: 28838.8 Da    PI: 8.9357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P07660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-181462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            +g+W++eEd++l+++++++G+g +W t +r+ g++R++k+c++rw++yl
  GSMUA_Achr11P07660_001 14 KGPWSPEEDKQLKEYIEKHGTGgNWITLPRKAGLRRCGKSCRLRWLNYL 62
                            79*********************************************97 PP
2Myb_DNA-binding34.83.9e-1170111346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              ++ +Ed  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr11P07660_001  70 DFSDDEDRVICSLFAAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                             699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.459966IPR017930Myb domain
SuperFamilySSF466891.68E-2711109IPR009057Homeodomain-like
SMARTSM007173.7E-131364IPR001005SANT/Myb domain
PfamPF002492.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221569IPR009057Homeodomain-like
CDDcd001671.16E-101662No hitNo description
PROSITE profilePS5129415.04967117IPR017930Myb domain
SMARTSM007179.4E-1067115IPR001005SANT/Myb domain
PfamPF002499.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2170117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDKQLKEYIE KHGTGGNWIT LPRKAGLRRC GKSCRLRWLN  60
YLRPNLKLGD FSDDEDRVIC SLFAAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGL  120
PPSHRKPHHH QQQPLFFPST LETTASFSSS APGLEGIPIS PYLLSYSTPA SAFPLPQIPA  180
HQIGGRISHQ QSCSSDDGIS TQICNGGREH LVLDNSLYGG LEIEKLLLGE RSLGCNSEEI  240
KAIVCPSSVY LDGKDGARRG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383125.10.0PREDICTED: transcription factor RAX2-like
SwissprotQ9FKL23e-71MYB36_ARATH; Transcription factor MYB36
SwissprotQ9SJL71e-71RAX2_ARATH; Transcription factor RAX2
TrEMBLM0RQ960.0M0RQ96_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P07660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-68MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]