PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P08310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 632aa    MW: 69134.1 Da    PI: 6.7422
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P08310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.24.9e-25179228151
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                             kpr++Wt eLH++Fv av+qL G +kA+Pk+il+lm+v+ Lt+e+v+SHLQ
  GSMUA_Achr11P08310_001 179 KPRVVWTVELHRKFVAAVNQL-GVDKAVPKKILDLMNVEKLTRENVASHLQ 228
                             79*******************.***************************** PP
2Response_reg82.11.8e-27191271109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl vdD+p+ ++ll+ +l++ +y +v+++d++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+ge ++
  GSMUA_Achr11P08310_001  19 VLAVDDDPICLRLLEALLRRCQY-NVTTTDKAITALKLLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQT 103
                             799********************.***************888888*******************87754.558************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +eel++
  GSMUA_Achr11P08310_001 104 VMKGITHGACDYLLKPVRIEELRN 127
                             **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1541632IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3616141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4216154No hitNo description
SMARTSM004486.8E-3317129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.12518133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.23E-2241133No hitNo description
Gene3DG3DSA:1.10.10.607.6E-26176229IPR009057Homeodomain-like
PROSITE profilePS5129410.354176235IPR017930Myb domain
SuperFamilySSF466893.58E-16177229IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-22179229IPR006447Myb domain, plants
PfamPF002496.3E-6181228IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MTIEESMGSR DQFPVGMRVL AVDDDPICLR LLEALLRRCQ YNVTTTDKAI TALKLLRENK  60
DKFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSANGE TQTVMKGITH GACDYLLKPV  120
RIEELRNIWQ HVIRRRKFER RCDNDPDGRE DGQKSQVAKS EDGQGAADHN NEDPSAQKKP  180
RVVWTVELHR KFVAAVNQLG VDKAVPKKIL DLMNVEKLTR ENVASHLQAS HNYGSEYYRL  240
YLKRLSAVAG HQASITAAVG VRNPSYLHMA SFNGLRNYCA INGSKQLPIL GSLQQNGFGR  300
MNSPMLGMHA LLPSQTVQLG VNLLQGVPTA LELEQFPQPK LMQEAKSHFP AGLSDSGLAA  360
GPCSNSFPNV TNNSLLVQAN KQHNQSGGLD NFSIVRMPSS SSELFEIDLQ DVSQFSSISR  420
CDGSWQGAVA STEYSANPLP ILAPYNHTDI PPGNVGRNIS TVTSHPVTRT LDESPNIKAV  480
APLCNPTTSN GVNQVRLLSA SSVPTALDKD PKFSNFNIIG NSQQKWDYTF NPNAVSSASS  540
SSSLPNLRIT DATAQCRTSE FVFSNKNLDV DSIGQVNFGS PLITQNCMID KPTSDSQLNF  600
KGEYGSTSFQ SGLNSAGCSL DDLVNAMIKP NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-24175246164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2261968e-73AC226196.1 Musa acuminata clone BAC MA4-125A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382858.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLM0RQG10.0M0RQG1_MUSAM; Two-component response regulator
STRINGGSMUA_Achr11P08310_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12